CDS

Accession Number TCMCG007C40422
gbkey CDS
Protein Id XP_033128264.1
Location complement(join(27564883..27564935,27565430..27565574,27565728..27566065,27566315..27566812,27566891..27566972,27567053..27567174,27567259..27567430))
Gene LOC103827734
GeneID 103827734
Organism Brassica rapa

Protein

Length 469aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033272373.1
Definition CTD small phosphatase-like protein 2 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category K
Description Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01009        [VIEW IN KEGG]
KEGG_ko ko:K17616        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004721        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006470        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016311        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016791        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042578        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCATATATAGACATGAAGAGCAAAACAAGCAAGCCTCTTGGTGTCGTCTCTAAGAAACCTAAACCGACTATTAGAAATTCATCCTCTCTCTCCAAAATCTCAGGGCACTTGGAAAGCATCACAACCACAGCTACTCTTACTTGCCAAGACGATACCAAACAGCAACTTGGTTCGGATACTTTTGCTCGGGATGTTGAAACCAACGAGCCCGCTGAAATGCTTGTTGAAGACGCTTCTCAGTCTCAGACGTTTGCTTCTTCCGTTGATGCTTCTGAATCTGTCGCAAAAATGGAGATGGCTTGCAACTATATAGCAAACTCGGACACAATATTTTCACCTGTTTTGAATGATGAACTCGATGGAACTGATCGAGTTTTTACGGCAGGAAACTCTGTGCACTGGGAAATTCCCAGGTGGGGAAGCGACGAGAGCAGCAACAAGATTTGCTTTGACAACCAAACGTGCAACGTTTCTGATTTCTTTATATCTGACGTTCTCATTGCGAGCTTGCCCTTTGACGAGAGTGGAACCAATGATGCTTTCACCGAGATAAGCCCCTTGCCTCATTTCATATTCCCGGAGCAATACATGTTACTGCCTTACTTGGAAGATGGAGCAGCCAACACAGATGATGTCAAGTCAGATGCTGACAACAGGATTACTCTTGATAACCATGACTTCTTTCTGGCGTTCAACCGGACAAGATCACACAACATGCAACCGGAGGATCTTGCTGAATCTGAACAAGCTGATGATTTTGATCCTCAGCTATTTATAAAGAATCAGCCGGAACTATCGGACGTTGTGTCCAGCTATTGGCCTAGGGATACCCTGAGAAAGAAGGATGTGACTCTTGTCCTTGATTTGGATGAAACTCTGGTCCATTCGACTCTGGAATCGTGCAGTGGTGCAGATTTTTCCTTTAGAGTCTTTTTCAACATGCAAGAGAACACGGTCTACGTGAAGCAAAGGCCACACCTGTACAAGTTCTTGGAGAGGGTGGTCGAACTGTTCCATGTCGTTATCTTCACGGCTAGCCACAGCATCTATGCTTCACAACTTCTAGATATCTTGGACCCAGATGGAAAGTTTATATCGCAGCGTTTTTATCGAGACTCGTGCATTCTTTCGGAAGGAATTTACACCAAGGATTTAACTGTTCTGGGTCTTGATTTGGCCAAAGTGGCTATAATTGACAACTGTCCGCAGGTGTACAGGTTGCAAATAAATAACGGGATCCCTATCAAAAGTTGGTATGATGATCCAACTGATGATGGTTTGATAACTATACTTCCCTTCCTAGAGACTTTGGCTGTTGCTGATGATGTTCGGCCTATCATTGGCAGGAGATTTGAAGTTGAGCTTGAATCTTCATCGAGCTTGTATGGTTTATTGTACACGTTTTAA
Protein:  
MPYIDMKSKTSKPLGVVSKKPKPTIRNSSSLSKISGHLESITTTATLTCQDDTKQQLGSDTFARDVETNEPAEMLVEDASQSQTFASSVDASESVAKMEMACNYIANSDTIFSPVLNDELDGTDRVFTAGNSVHWEIPRWGSDESSNKICFDNQTCNVSDFFISDVLIASLPFDESGTNDAFTEISPLPHFIFPEQYMLLPYLEDGAANTDDVKSDADNRITLDNHDFFLAFNRTRSHNMQPEDLAESEQADDFDPQLFIKNQPELSDVVSSYWPRDTLRKKDVTLVLDLDETLVHSTLESCSGADFSFRVFFNMQENTVYVKQRPHLYKFLERVVELFHVVIFTASHSIYASQLLDILDPDGKFISQRFYRDSCILSEGIYTKDLTVLGLDLAKVAIIDNCPQVYRLQINNGIPIKSWYDDPTDDGLITILPFLETLAVADDVRPIIGRRFEVELESSSSLYGLLYTF